PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H0HJA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 517aa    MW: 57737.6 Da    PI: 9.4979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H0HJAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-065779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Aradu.H0HJA 57 YVCEICNQGFQRDQNLQMHRRRH 79
                 9*********************9 PP

2zf-C2H214.30.00012134156123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k +  +s++k H++t+
  Aradu.H0HJA 134 WVCERCSKGYAVQSDYKAHLKTC 156
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-55480No hitNo description
Gene3DG3DSA:3.30.160.602.2E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PfamPF128740.0265775No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLANNSSVAP SSEPFSCADN SNGTPSNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACNMGRLRTE SHHNHNHNHQ PPPTPTACLS RTASSPSPSR SETNFSTAPW QPTSSTTTTT  240
TTTTPTSLVV ITKPITTTTE PPFFNNTNPT PILATAETFL FKKSNTSNKL HHPNLDLQLS  300
TTTTTTTMMM NNNNSIPNVD LTLSPKSDNN HHQQLQNQQH STQLQLSIGG TTSSDISENN  360
NKNDSSNRNS SPKESINSSN ENKHATATSM ALRVQEQARE QLRLAMAEKA YAEEARKQAK  420
RQIEMAEQEF NNAKRIRQQA QAELDKACAL KEHAMKKINS TIMQITCHSC KQHFHLQPPP  480
VSATAPPDEN SLVLSYMSSG ITTEESAMNK GRQGGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966840.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-116IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0L9VIL00.0A0A0L9VIL0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TCE70.0A0A0S3TCE7_PHAAN; Uncharacterized protein
STRINGGLYMA09G30030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-112C2H2-like zinc finger protein